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1

Recent Advancements in the Development of Modern Probiotics for Restoring Human Gut Microbiome Dysbiosis

Kumar, Roshan, Sood, Utkarsh, Gupta, Vipin, Singh, Mona, Scaria, Joy, Lal, Rup

Journal:

Indian Journal of Microbiology

Année:

2019

Langue:

english

Fichier:

PDF, 526 KB

english, 2019

2

Identification of Clostridioides difficile -Inhibiting Gut Commensals Using Culturomics, Phenotyping, and Combinatorial Community Assembly

Ghimire, Sudeep, Roy, Chayan, Wongkuna, Supapit, Antony, Linto, Maji, Abhijit, Keena, Mitchel Chan, Foley, Andrew, Scaria, Joy, Manichanh, Chaysavanh

Journal:

Année:

2020

Fichier:

PDF, 8.81 MB

2020

3

Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis

Joy Scaria, Aswathy Sreedharan, Yung-Fu Chang

Journal:

Source Code for Biology and Medicine

Année:

2008

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2008

4

Analysis ofEscherichia coliO157 clinical isolates by multilocus sequence typing

Swaraj Rajkhowa, Joy Scaria, Daniel L Garcia, Kimberlee A Musser, Bruce L Akey, Yung-Fu Chang

Journal:

BMC Research Notes

Année:

2010

Langue:

english

Fichier:

PDF, 395 KB

english, 2010

5

Development of a microarray for identification of pathogenic Clostridium spp.

Tavan Janvilisri, Joy Scaria, Robin Gleed, Susan Fubini, Michelle M. Bonkosky, Yrjö T. Gröhn, Yung-Fu Chang

Journal:

Diagnostic Microbiology and Infectious Disease

Année:

2010

Langue:

english

Fichier:

PDF, 963 KB

english, 2010

6

Microarray for molecular typing of Salmonella enterica serovars

Joy Scaria, Raghavan U.M. Palaniappan, David Chiu, Julie Ann Phan, Lalit Ponnala, Patrick McDonough, Yrjo T. Grohn, Steffen Porwollik, Michael McClelland, Chien-Shun Chiou, Chishih Chu, Yung-Fu Chang

Journal:

Molecular and Cellular Probes

Année:

2008

Langue:

english

Fichier:

PDF, 612 KB

english, 2008

7

Comparison of phenotypic and genotypic antimicrobial profiles in Escherichia coli and Salmonella enterica from the same dairy cattle farms

Joy Scaria, Lorin D. Warnick, John B. Kaneene, Katherine May, Ching-Hao Teng, Yung-Fu Chang

Journal:

Molecular and Cellular Probes

Année:

2010

Langue:

english

Fichier:

PDF, 4.67 MB

english, 2010

8

Immunogenicity and protective efficacy of the Mycobacterium avium subsp. paratuberculosis attenuated mutants against challenge in a mouse model

Jenn-Wei Chen, Syed M. Faisal, Subhash Chandra, Sean P. McDonough, Maria A.S. Moreira, Joy Scaria, Chao-Fu Chang, John P. Bannantine, Bruce Akey, Yung-Fu Chang

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2012

9

Proteomic Comparison of Historic and Recently Emerged Hypervirulent Clostridium difficile Strains

Chen, Jenn-Wei, Scaria, Joy, Mao, Chunhong, Sobral, Bruno, Zhang, Sheng, Lawley, Trevor, Chang, Yung-Fu

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2013

10

Transcriptional Profiling of Clostridium difficile and Caco‐2 Cells during Infection

Janvilisri, Tavan, Scaria, Joy, Chang, Yung‐Fu

Journal:

The Journal of Infectious Diseases

Année:

2010

Langue:

english

Fichier:

PDF, 5.30 MB

english, 2010

11

Comparative nutritional and chemical phenome of Clostridium difficile isolates determined using phenotype microarrays

Scaria, Joy, Chen, Jenn-Wei, Useh, Nicodemus, He, Hongxuan, McDonough, Sean P., Mao, Chunhong, Sobral, Bruno, Chang, Yung-Fu

Journal:

International Journal of Infectious Diseases

Année:

2014

Langue:

english

Fichier:

PDF, 6.47 MB

english, 2014

12

Comparative genomic and phenomic analysis of Clostridium difficile and Clostridium sordellii, two related pathogens with differing host tissue preference

Scaria, Joy, Suzuki, Haruo, Ptak, Christopher P., Chen, Jenn-Wei, Zhu, Yongzhang, Guo, Xiao-Kui, Chang, Yung-Fu

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 3.60 MB

english, 2015

13

Distribution and factors associated with Salmonella enterica genotypes in a diverse population of humans and animals in Qatar using multi-locus sequence typing (MLST)

Chang, Yu Chen, Scaria, Joy, Ibraham, Mariamma, Doiphode, Sanjay, Chang, Yung-Fu, Sultan, Ali, Mohammed, Hussni Omar

Journal:

Journal of Infection and Public Health

Année:

2015

Langue:

english

Fichier:

PDF, 655 KB

english, 2015

14

Complete Genome Sequence of a Highly Pathogenic Avian Influenza Virus (H5N2) Associated with an Outbreak in Commercial Chickens, Iowa, USA, 2015

Clement, Travis, Kutish, Gerald F., Nezworski, Jill, Scaria, Joy, Nelson, Eric, Christopher-Hennings, Jane, Diel, Diego G.

Journal:

Genome Announcements

Année:

2015

Langue:

english

Fichier:

PDF, 141 KB

english, 2015

15

Draft Genome Sequences of 37 Salmonella enterica Strains Isolated from Poultry Sources in Nigeria: TABLE 1

Useh, Nicodemus M., Ngbede, Emmanuel O., Akange, Nguavese, Thomas, Milton, Foley, Andrew, Keena, Mitchel Chan, Nelson, Eric, Christopher-Hennings, Jane, Tomita, Masaru, Suzuki, Haruo, Scaria, Joy

Journal:

Genome Announcements

Année:

2016

Langue:

english

Fichier:

PDF, 147 KB

english, 2016

16

Draft Genome Sequences of Three Flavobacterium psychrophilum Strains Isolated from Coldwater Disease Outbreaks at Three Production Hatcheries: TABLE 1

Neiger, Regg, Thomas, Milton, Das, Seema, Barnes, Michael, Fletcher, Brian, Snekvik, Kevin, Thompson, Jim, Scaria, Joy

Journal:

Genome Announcements

Année:

2016

Langue:

english

Fichier:

PDF, 143 KB

english, 2016

17

Genome Sequences of Salmonella enterica subsp. enterica Serovar Lubbock Strains Isolated from Liver Abscesses of Feedlot Cattle: TABLE 1

Amachawadi, Raghavendra G., Thomas, Milton, Nagaraja, Tiruvoor G., Scaria, Joy

Journal:

Genome Announcements

Année:

2016

Langue:

english

Fichier:

PDF, 140 KB

english, 2016

18

Genetic Relatedness Among Shiga Toxin–Producing Escherichia coli Isolated Along the Animal Food Supply Chain and in Gastroenteritis Cases in Qatar Using Multilocus Sequence Typing

Palanisamy, Srikanth, Chang, YuChen, Scaria, Joy, Penha Filho, Rafael Antonio Casarin, Peters, Kenlyn E., Doiphode, Sanjay H., Sultan, Ali, Mohammed, Hussni O

Journal:

Foodborne Pathogens & Disease

Année:

2017

Langue:

english

Fichier:

PDF, 235 KB

english, 2017

19

A Novel Fluorometric Bio-sensing based Arsenic Detection System for Groundwater

Gudlavalleti, Raja Hari, Bose, Subash Chandra, Verma, Sanjay Kumar, Khatri, Punit, Scaria, Joy, Dhewa, Shripal, Chaubey, Vinod Kumar

Journal:

IEEE Sensors Journal

Année:

2017

Langue:

english

Fichier:

PDF, 665 KB

english, 2017

20

Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle

Thomas, Milton, Webb, Megan, Ghimire, Sudeep, Blair, Amanda, Olson, Kenneth, Fenske, Gavin John, Fonder, Alex Thomas, Christopher-Hennings, Jane, Brake, Derek, Scaria, Joy

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 7.13 MB

english, 2017

21

Angiopoietin-2 level as a tool for cardiovascular risk stratification in hypertensive type 2 diabetic subjects

Siddiqui, Khalid, Joy, Salini Scaria, Nawaz, Shaik Sarfaraz, Al Otaibi, Mohammad T., Al-Rubeaan, Khalid

Journal:

Postgraduate Medicine

Année:

2018

Langue:

english

Fichier:

PDF, 922 KB

english, 2018

22

Whole genome sequencing-based detection of antimicrobial resistance and virulence in non-typhoidal Salmonella enterica isolated from wildlife

Thomas, Milton, Fenske, Gavin John, Antony, Linto, Ghimire, Sudeep, Welsh, Ronald, Ramachandran, Akhilesh, Scaria, Joy

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.38 MB

english, 2017

23

Phenotypic and Transcriptomic Response of Auxotrophic Mycobacterium avium Subsp. paratuberculosis leuD Mutant under Environmental Stress

Chen, Jenn-Wei, Scaria, Joy, Chang, Yung-Fu, Lin, Baochuan

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 4.99 MB

english, 2012

24

Temporal Differential Proteomes of Clostridium difficile in the Pig Ileal-Ligated Loop Model

Janvilisri, Tavan, Scaria, Joy, Teng, Ching-Hao, McDonough, Sean P., Gleed, Robin D., Fubini, Susan L., Zhang, Sheng, Akey, Bruce, Chang, Yung-Fu, Popoff, Michel R.

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 2.09 MB

english, 2012

25

Variation in Macro and Trace Elements in Progression of Type 2 Diabetes

Siddiqui, Khalid, Bawazeer, Nahla, Scaria Joy, Salini

Journal:

The Scientific World JOURNAL

Année:

2014

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2014

26

High-Throughput Screening for Biomarker Discovery

Janvilisri, Tavan, Suzuki, Haruo, Scaria, Joy, Chen, Jenn-Wei, Charoensawan, Varodom

Journal:

Disease Markers

Année:

2015

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2015

27

Advances in Molecular Diagnostics

Janvilisri, Tavan, Bhunia, Arun K., Scaria, Joy

Journal:

BioMed Research International

Année:

2013

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2013

28

Serum Angiopoietin-2 levels as a marker in type 2 diabetes mellitus complications

Siddiqui, Khalid, Joy, Salini Scaria, Nawaz, Shaik Sarfaraz

Journal:

International Journal of Diabetes in Developing Countries

Année:

2018

Langue:

english

Fichier:

PDF, 452 KB

english, 2018

29

Comparative Genomic Studies of Salmonella Heidelberg Isolated From Chicken- and Turkey-Associated Farm Environmental Samples

Deblais, Loïc, Lorentz, Benjamin, Scaria, Joy, Nagaraja, Kakambi V., Nisar, Muhammad, Lauer, Dale, Voss, Shauna, Rajashekara, Gireesh

Journal:

Frontiers in Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2018

30

National survey of Salmonella prevalence in lymph nodes of sows and market hogs1

Bessire, Baylee C, Thomas, Milton, Gehring, Kerri B, Savell, Jeffrey W, Griffin, Davey B, Taylor, T Matthew, Mikel, W Benjy, Campbell, Jonathan A, Arnold, Ashley N, Scaria, Joy

Journal:

Translational Animal Science

Année:

2018

Langue:

english

Fichier:

PDF, 2.51 MB

english, 2018

31

The predictive value of quantitative nucleic acid amplification detection of Clostridium difficile toxin gene for faecal sample toxin status and patient outcome

Davies, Kerrie A., Planche, Tim, Wilcox, Mark H., Scaria, Joy

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 745 KB

english, 2018

32

Genome divergence and increased virulence of outbreak associated Salmonella enterica subspecies enterica serovar Heidelberg

Antony, Linto, Behr, Melissa, Sockett, Donald, Miskimins, Dale, Aulik, Nicole, Christopher-Hennings, Jane, Nelson, Eric, Allard, Marc W., Scaria, Joy

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1.81 MB

english, 2018

33

Draft Genome Sequences of Salmonella enterica subsp. enterica Serotype Heidelberg from Chicken and Turkey Farm Environments

Deblais, Loïc, Scaria, Joy, Rajashekara, Gireesh, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 140 KB

english, 2018

34

The Flavonoid Metabolite 2,4,6-Trihydroxybenzoic Acid Is a CDK Inhibitor and an Anti-Proliferative Agent: A Potential Role in Cancer Prevention

Sankaranarayanan, Ranjini, Valiveti, Chaitanya, Kumar, D., Van slambrouck, Severine, Kesharwani, Siddharth, Seefeldt, Teresa, Scaria, Joy, Tummala, Hemachand, Bhat, G.

Journal:

Année:

2019

Fichier:

PDF, 3.78 MB

2019

35

Genotypic and Phenotypic Characterization of Salmonella Isolated from Fresh Ground Meats Obtained from Retail Grocery Stores in the Brookings, South Dakota, Area

ERICKSON, ALAN K., MURRAY, DEBRA L., RUESCH, LAURA A., THOMAS, MILTON, LAU, ZACHARY, SCARIA, JOY

Journal:

Journal of Food Protection

Année:

2018

Langue:

english

Fichier:

PDF, 205 KB

english, 2018

36

The Flavonoid Metabolite 2,4,6-Trihydroxybenzoic Acid Is a CDK Inhibitor and an Anti-Proliferative Agent: A Potential Role in Cancer Prevention

Sankaranarayanan, Ranjini, Valiveti, Chaitanya, Kumar, D., Van slambrouck, Severine, Kesharwani, Siddharth, Seefeldt, Teresa, Scaria, Joy, Tummala, Hemachand, Bhat, G.

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 3.78 MB

english, 2019

37

Enhancing the one health initiative by using whole genome sequencing to monitor antimicrobial resistance of animal pathogens: Vet-LIRN collaborative project with veterinary diagnostic laboratories in United States and Canada

Ceric, Olgica, Tyson, Gregory H., Goodman, Laura B., Mitchell, Patrick K., Zhang, Yan, Prarat, Melanie, Cui, Jing, Peak, Laura, Scaria, Joy, Antony, Linto, Thomas, Milton, Nemser, Sarah M., Anderson,

Journal:

BMC Veterinary Research

Année:

2019

Langue:

english

Fichier:

PDF, 1.88 MB

english, 2019

38

Ground beef microbiome changes with antimicrobial decontamination interventions and product storage

Weinroth, Margaret D., Britton, Brianna C., McCullough, Kathryn R., Martin, Jennifer N., Geornaras, Ifigenia, Knight, Rob, Belk, Keith E., Metcalf, Jessica L., Scaria, Joy

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2019

39

Association of urinary monocyte chemoattractant protein-1 (MCP-1) and kidney injury molecule-1 (KIM-1) with risk factors of diabetic kidney disease in type 2 diabetes patients

Siddiqui, Khalid, Joy, Salini Scaria, Al-Rubeaan, Khalid

Journal:

International Urology and Nephrology

Année:

2019

Langue:

english

Fichier:

PDF, 769 KB

english, 2019

40

Effects of health-related claims on millennials’ willingness to pay for probiotics in the U.S.: Implications for regulation

Kolady, Deepthi E., Kattelmann, Kendra, Scaria, Joy

Journal:

Journal of Functional Foods

Année:

2019

Langue:

english

Fichier:

PDF, 725 KB

english, 2019

41

Effects of health-related claims on millennials’ willingness to pay for probiotics in the U.S.: Implications for regulation

Kolady, Deepthi E., Kattelmann, Kendra, Scaria, Joy

Journal:

Journal of Functional Foods

Année:

2019

Fichier:

PDF, 725 KB

2019

42

Geography Shapes the Population Genomics of Salmonella enterica Dublin

Fenske, Gavin J, Thachil, Anil, McDonough, Patrick L, Glaser, Amy, Scaria, Joy, Delaye, Luis

Journal:

Genome Biology and Evolution

Année:

2019

Langue:

english

Fichier:

PDF, 1.22 MB

english, 2019

43

Sellimonas caecigallum sp. nov., description and genome sequence of a new member of the Sellimonas genus isolated from the cecum of feral chicken

Wongkuna, Supapit, Ghimire, Sudeep, Antony, Linto, Chankhamhaengdecha, Surang, Janvilisri, Tavan, Scaria, Joy

Journal:

New Microbes and New Infections

Année:

2019

Fichier:

PDF, 4.19 MB

2019

44

Genome sequence and description of Blautia brookingsii SG772 sp. nov., a novel bacterial species isolated from the human feces

Ghimire, Sudeep, Wongkuna, Supapit, Kumar, Roshan, Nelson, Eric, Christopher-Hennings, Jane, Scaria, Joy

Journal:

New Microbes and New Infections

Année:

2020

Fichier:

PDF, 1.04 MB

2020

45

Defining the Environmental Adaptations of Genus Devosia: Insights into its Expansive Short Peptide Transport System and Positively Selected Genes

Talwar, Chandni, Nagar, Shekhar, Kumar, Roshan, Scaria, Joy, Lal, Rup, Negi, Ram Krishan

Journal:

Scientific Reports

Année:

2020

Langue:

english

Fichier:

PDF, 6.85 MB

english, 2020

46

VCAM-1, ICAM-1 and selectins in gestational diabetes mellitus and the risk for vascular disorders

Siddiqui, Khalid, George, Teena P, Nawaz, Shaik Sarfaraz, Joy, Salini Scaria

Journal:

Future Cardiology

Année:

2019

Fichier:

PDF, 1.30 MB

2019

47

Association of sex hormone binding globulin with gestational age and parity in gestational diabetes mellitus

Siddiqui, Khalid, George, Teena P., Joy, Salini Scaria, Nawaz, Shaik Sarfaraz

Journal:

Journal of Maternal-Fetal and Neonatal Medicine

Année:

2020

Fichier:

PDF, 1.31 MB

2020

48

Association of urinary non-albumin protein with the different urinary marker for glomerular and tubular damage in patients with type 2 diabetes

Siddiqui, Khalid, Joy, Salini Scaria, Nawaz, Shaik Sarfaraz, Alnaqeb, Dhekra, Mujammami, Muhammad, Al-Rubeaan, Khalid

Journal:

Année:

2020

Fichier:

PDF, 905 KB

2020

49

Small Molecule Adjuvants Potentiate Colistin Activity and Attenuate Resistance Development in Escherichia coli by Affecting pmrAB System

Kathayat, Dipak, Antony, Linto, Deblais, Loic, Helmy, Yosra, Scaria, Joy, Rajashekara, Gireesh

Journal:

Infection and Drug Resistance

Année:

2020

Fichier:

PDF, 3.66 MB

2020

50

Antibiotic-Resistant Escherichia coli and Sequence Type 131 in Fecal Colonization in Dogs in Taiwan

Chen, Jenn-Wei, Huang, Han Hsiang, Chang, Szu-Min, Scaria, Joy, Chiu, Yu-Lung, Chen, Chih-Ming, Ko, Wen-Chien, Wang, Jiun-Ling

Journal:

Année:

2020

Fichier:

PDF, 668 KB

2020